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HiScribe® T7 mRNA Kit with CleanCap® Reagent AG |NEB酶试剂 New England Biolabs

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上海金畔生物科技有限公司代理New England Biolabs（NEB）酶试剂全线产品，欢迎访问官网了解更多产品信息和订购。

产品信息

Most eukaryotic mRNAs require a 7-methyl guanosine (m7G) cap structure at the 5´-end and a poly(A) tail at the 3′-end for efficient translation.  The HiScribe T7 mRNA Kit with CleanCap Reagent AG utilizes an optimized RNA synthesis formulation and trinucleotide cap analog technology for co-transcriptionally capping mRNAs that contain a natural Cap-1 structure in a single simplified reaction without compromising RNA yield.  By using a DNA template with a T7 promoter sequence followed by an AG initiation sequence and an encoded poly(A) tail, mRNAs can be transcribed with a 5´-m7G Cap-1 structure that is polyadenylated, translationally competent and able to evade the cellular innate immune response.  

The HiScribe T7 mRNA Kit with CleanCap Reagent AG is formatted with individual vials of NTPs and CleanCap Reagent AG to allow for partial or complete substitution of modified NTPs, with a total kit yield of 1.8 mg of mRNA.  Cap-1 mRNA synthesized from this kit is suitable for many applications, including transfections, microinjections, in vitro translation, preclinical mRNA therapeutic mRNA studies as well as RNA structure and function analysis.

This kit contains sufficient reagents for 20 reactions (20 µl each).  Each standard reaction yields ≥ 90 µg of RNA from 1 µg CLuc AG Control Template DNA.  Each kit can yield ≥ 1.8 mg RNA.

Figure: 1: CleanCap Reagent AG

HiScribe® T7 mRNA Kit with CleanCap® Reagent AG |

FIgure 2: Schematic of CleanCap Reagent AG Promoter and Initiation Sequence

HiScribe® T7 mRNA Kit with CleanCap® Reagent AG |

Figure 3: CleanCap Reagent AG results in higher mRNA synthesis yield than the ARCA analog

HiScribe® T7 mRNA Kit with CleanCap® Reagent AG | 

All reactions were performed with 5 mM CTP, 5 mM UTP and 6 mM ATP.  Standard IVT reactions included 5 mM GTP and no cap analog.  ARCA reactions contained a 4:1 ratio of ARCA:GTP (4mM:1mM).  IVT with CleanCap Reagent AG contained 5 mM GTP and 4 mM CleanCap Reagent AG and was performed according to recommended protocol (Standard mRNA Synthesis, HiScribe T7 mRNA Kit with CleanCap Reagent AG).  Reactions were incubated for 2 hours at 37°C, purified and quantified by NanoDrop®.
 
产品类别:
RNA Capping,
RNA Synthesis In vitro Transcription (IVT)

  • 产品组分信息

    本产品提供以下试剂或组分：

    NEB # 名称 组分货号 储存温度 数量 浓度
    • E2080S     -20    
        T7 RNA Polymerase Mix M0255AAVIAL -20 1 x 0.04 ml Not Applicable
        LiCl Solution B2051AVIAL -20 1 x 1.4 ml Not Applicable
        DNase I (RNase-free) M0303AAVIAL -20 1 x 0.04 ml 2,000 units/ml
        CLuc AG Control Template N2078AVIAL -20 1 x 0.02 ml 0.25 mg/ml
        10X T7 CleanCap® Reagent AG Reaction Buffer B2082AVIAL -20 1 x 0.04 ml Not Applicable
        CleanCap® Reagent AG S1413AVIAL -20 1 x 0.04 ml 40 mM
        ATP N0489AVIAL -20 1 x 0.04 ml 60 mM
        GTP N0490AVIAL -20 1 x 0.04 ml 50 mM
        CTP N0491AVIAL -20 1 x 0.04 ml 50 mM
        UTP N0492AVIAL -20 1 x 0.04 ml 50 mM
        Dithiothreitol (DTT) B1222AVIAL -20 1 x 0.5 ml 100 mM

  • 特性和用法

    需要但不提供的材料

    DNA Template:    
    The DNA template must be linear and contain the T7 RNA Polymerase Promoter with the correct orientation in relation to the target sequence to be transcribed, followed by an AG initiation sequence.

    Modified NTPs:    
    Biotin-, Fluorescein-, Digoxigenin-, Aminoallyl-, Pseudouridine-5—Triphosphate, etc.

    General:    
    Thermocycler, microcentrifuge, nuclease-free water, nuclease-free tubes and tips

    Purification:    
    Phenol, chloroform, ethanol, 3 M Sodium Acetate, pH 5.2 or Ammonium Acetate, Monarch® RNA Cleanup Kit (500 µg; T2050), equipment and reagents for RNA quantitation

    Gel Analysis:    
    Gels, running buffers, loading dye, nucleic acid ladders, gel apparatus, power supply
     

  • 优势和特性

    Features

    • Streamlined workflow with single-step co-transcriptional capping
    • CleanCap® Reagent AG trinucleotide cap technology results in a natural Cap-1 structure, maximizing translatability and minimizing immune response from synthetic mRNA
    • High capping efficiency (> 95% capped material1)
    • Optimized for high yields
    • Suitable for full- or partial- modified nucleotide substitution

    1Final capping is dependent upon the CleanCap Reagent, DNA template and final mRNA sequence. Secondary structure due to RNA length and base composition can affect final capping efficiency. 

     

  • 相关产品

    相关产品

    • e2040-hiscribe-t7-high-yield-rna-synthesis-kit
    • e2050-hiscribe-t7-quick-high-yield-rna-synthesis-kit
    • e2060-hiscribe-t7-arca-mrna-kit-with-tailing
    • 2X RNA 上样染料
    • m0307-rnase-inhibitor-human-placenta
    • 小鼠 RNase 抑制剂
    • m0303-dnase-i-rnase-free
    • ssRNA Ladder
    • 低分子量 ssRNA Ladder
    • E. coli Poly(A) 聚合酶
    • T2050 Monarch RNA Cleanup Kit 500 ug
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    • Q5® 热启动超保真 DNA 聚合酶
    • Q5® 热启动超保真 2X 预混液
    • Monarch® PCR & DNA 纯化试剂盒（5 μg）
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    • Q5® 定点突变试剂盒（不含感受态细胞）
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    • SOC Outgrowth 培养基
    • t1010-monarch-plasmid-miniprep-kit
    • e2065-hiscribe-t7-arca-mrna-kit

操作说明、说明书 & 用法

  • 操作说明

    1. Standard RNA Synthesis Protocol using the HiScribe T7 mRNA Kit with CleanCap Reagent AG (NEB #E2080)
    2. mRNA Synthesis Protocol with Modified Nucleotides using the HiScribe T7 mRNA Kit with CleanCap Reagent AG (NEB #E2080)

  • 说明书

    产品说明书包含产品使用的详细信息、产品配方和质控分析。

    • manualE2080

  • 应用实例

    • Scaling of High-Yield In vitro Transcription Reactions for Linear Increase of RNA Production

工具 & 资源

  • 选择指南

    • Recommended HiScribe® RNA Synthesis Kits by Application

FAQs & 问题解决指南

  • FAQs

    1. Do I need to change my promoter sequence to use CleanCap® Reagent AG?
    2. How can I change the initiating sequence of my dsDNA template?
    3. Will the 5′ base of my RNA be an “A”?
    4. Can an uncut plasmid be used as a template for the HiScribe® T7 mRNA Kit with CleanCap® Reagent AG?
    5. Can modified nucleotides be used with the HiScribe® T7 mRNA Kit with CleanCap® Reagent AG?
    6. How can I improve the yield of RNA when using the HiScribe® T7 mRNA Kit with CleanCap® Reagent AG?
    7. How can I purify the RNA synthesized using this kit?
    8. Can components from other HiScribe® kits, T7 RNA Polymerase (NEB #M0251) or RNAPol Reaction Buffer (NEB #B9012) be substituted in this kit?
    9. Do you recommend template-encoding the poly(A) tail or using E. coli Poly(A) Polymerase?
    10. Can I use a different CleanCap® Reagent analog with this kit? 
    11. Are modified nucleotides included in the kit?
    12. Do I need to add DTT to the reaction?

  • 问题解决指南

     

    Verify that the sequence following the T7 promoter contains the AG initiating sequence.

    Control Reaction

    The CLuc AG control template is a linearized plasmid containing the Cypridina luciferase gene under the transcriptional control of the T7 promoter. The initiating sequence has been changed to an AG by site-directed mutagenesis to be compatible with CleanCap Reagent AG. The size of the run-off transcript is ~1.76 kb. The control reaction, following the standard reaction protocol, should yield > 90 µg of RNA in 2 hours at 37°C. If the control reaction is not working, there may be technical issues with the reaction set up. Repeat the reaction following the protocol exactly (thawing specified reagents to room temperature, setting the reaction up at room temperature, and adding the components in the exact order listed in the manual. Take every precaution to avoid RNase contamination. The control plasmid sequence can be found within the DNA Sequences and Maps Tool under the name “pCMV-CLuc2 AG Control Plasmid”. The CLuc AG control template is generated by linearizing the plasmid with the restriction enzyme XbaI.

    Low Yield of Full-length RNA

    If the transcription reaction generates full-length RNA but yields are significantly lower than expected, it is possible that contaminants in the DNA template are inhibiting the RNA Polymerase or the DNA template concentration may be incorrect or too low. Additional purification of the DNA template may be required. Phenol:chloroform extraction is recommended (see template DNA preparation section).

    Low yield of Short Transcript

    High yields of short transcripts (< 300 nts) are achieved by extending incubation time and increasing the amount of template. Incubation of reactions up to 16 hours (overnight) or using up to 2 μg of template DNA can help achieve maximum yield.

    RNA Transcript Smearing on Denaturing Gel

    If the RNA appears degraded (smeared) on a denaturing agarose or polyacrylamide gel, the DNA template may be contaminated with RNase. DNA templates contaminated with RNase can affect the length and yield of RNA synthesized (smear below the expected RNA length). If the DNA template is contaminated with RNase, we recommend performing phenol:chloroform extraction followed by ethanol precipitation (see template DNA preparation section) and dissolving the DNA in nuclease-free water.

    RNA Transcript of Larger Size than Expected

    If the RNA transcript appears larger than the expected size on a denaturing gel when compared to a single-stranded RNA ladder, the plasmid DNA that is used for the template may not be completely digested. Even if small amounts of undigested circular plasmid DNA is present, T7 RNA Polymerase can produce large amounts of long transcripts. Check the digestion of the plasmid for complete digestion compared to a sample of undigested plasmid. If undigested plasmid is present repeat the restriction digest. Alternatively, larger sized bands may be observed when the RNA is not completely denatured due to the presence of strong secondary structure.

    RNA Transcript of Smaller Size than Expected

    If denaturing gel analysis indicates the presence of smaller bands than expected it is most likely due to premature termination by T7 RNA Polymerase. Sequences that resemble T7 RNA Polymerase termination signals will cause premature termination. For GC-rich templates, or templates with known strong secondary structure, incubation at 42°C may improve the yield of full-length transcript.

     

HiScribe® T7 Quick High Yield RNA Synthesis Kit |NEB酶试剂 New England Biolabs

发表于由

上海金畔生物科技有限公司代理New England Biolabs（NEB）酶试剂全线产品，欢迎访问官网了解更多产品信息和订购。

产品信息

The HiScribe T7 Quick High Yield RNA Synthesis Kit is designed for quick set-up and production of large amounts of RNA in vitro. The reaction can be set up conveniently by combining the NTP buffer mix, T7 RNA Polymerase mix and a suitable DNA template. The kit also allows for capped RNA or dye-labeled RNA synthesis by incorporation of cap analog (ARCA, NEB #S1411) or dye-modified nucleotides. RNA synthesized with the kit can be used for RNA structure and function studies, ribozyme biochemistry, as probes for RNase protection assays and hybridization based blots, anti-sense RNA and RNAi experiments, microarray analysis and microinjection, as well as in vitro translation and RNA vaccines.

To synthesize high specific activity radioactive RNA probes or RNA with 100% substitution of one or more modified nucleotides we recommend using the T7 High Yield RNA Synthesis Kit (NEB #E2040), in which the four nucleotides are supplied separately.

DNA Template Preparation:
Linearized plasmid DNA, PCR products or synthetic DNA oligonucleotides can be used as templates for in vitro transcription with the HiScribe T7 Quick High Yield RNA Synthesis Kit, provided that they contain a double-stranded T7 promoter region upstream of the sequence to be transcribed. Figure 1 illustrates the minimal T7 promoter sequence, as well as a run-off transcript after T7 transcription.

Figure 1. Transcription by T7 RNA PolymeraseHiScribe® T7 Quick High Yield RNA Synthesis Kit |
产品类别:
RNA Synthesis In vitro Transcription (IVT)

  • 试剂盒组成

    本产品提供以下试剂或组分：

    NEB # 名称 组分货号 储存温度 数量 浓度
    • E2050S     -20    
        FLuc Control Template N0426AVIAL -20 1 x 0.01 ml 0.5 µg/µl
        DNase I (RNase-free) M0303AVIAL -20 1 x 0.1 ml 2,000 units/ml
        T7 RNA Polymerase Mix M0255AVIAL -20 1 x 0.1 ml Not Applicable
        LiCl Solution B2051AVIAL -20 1 x 1.4 ml Not Applicable
        NTP Buffer Mix N2052AVIAL -20 1 x 0.5 ml Not Applicable
        Dithiothreitol (DTT) B1222AVIAL -20 1 x 0.5 ml 100 mM

  • 特性和用法

    需要但不提供的材料

    • DNA Template
    • Thermocycler or 37°C incubator.
    • Nuclease-Free Water
    • Buffer- or water-saturated phenol:chloroform
    • Ethanol
    • 3 M Sodium Acetate, pH 5.2
    • 5 M Ammonium Acetate
    • Spin Columns (See Monarch® RNA Cleanup Kits, NEB #T2030, #T2040, #T2050)
    • Gels, running buffers and gel box

  • 相关产品

    相关产品

    • 2X RNA 上样染料
    • m0307-rnase-inhibitor-human-placenta
    • 小鼠 RNase 抑制剂
    • m0303-dnase-i-rnase-free
    • Q5® 热启动超保真 DNA 聚合酶
    • ssRNA Ladder
    • 低分子量 ssRNA Ladder
    • s1411-3-o-me-m7g5ppp5g-rna-cap-structure-analog
    • s1405-m7g5ppp5a-rna-cap-structure-analog
    • s1406-g5ppp5a-rna-cap-structure-analog
    • s1407-g5ppp5g-rna-cap-structure-analog
    • s1404-m7g5ppp5g-rna-cap-structure-analog
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    • E. coli Poly(A) 聚合酶
    • rNTP 混合液
    • rNTP 套装
    • T2040 Monarch RNA Cleanup Kit 50 ug

操作说明、说明书 & 用法

  • 操作说明

    1. Standard RNA Synthesis (E2050)
    2. RNA Synthesis with Modified Nucleotides (E2050)
    3. Purification of Synthesized RNA (E2050)
    4. Evaluation of Reaction Products (E2050)
    5. In vitro digestion of DNA with Cas9 Nuclease, S. pyogenes (M0386)
    6. Poly(A) Tailing of RNA using E. coli Poly(A) Polymerase (NEB# M0276)
    7. Using recombinant Cas9 nuclease to assess locus modification in genome editing experiments (#M0386)
    8. sgRNA Synthesis Using the HiScribe&reg; Quick T7 High Yield RNA Synthesis Kit (NEB #E2050)
    9. Capped RNA Synthesis (E2050)

  • 说明书

    产品说明书包含产品使用的详细信息、产品配方和质控分析。

    • manualE2050

  • 应用实例

    • Scaling of High-Yield In vitro Transcription Reactions for Linear Increase of RNA Production

FAQs & 问题解决指南

  • FAQs

    1. Can I use the Monarch RNA Cleanup Kits to cleanup my in vitro transcription (IVT) reaction?
    2. How can I improve on a low yield of RNA from the transcription reaction?
    3. Are modified nucleotides included in the kit?
    4. Do I need to add DTT to the reaction?

  • 问题解决指南

    • Control Reaction
      The FLuc control template DNA is a linearized plasmid containing the firefly luciferase gene under the transcriptional control of the T7 promoter. The size of the runoff transcript is 1.8 kb. The control reaction should yield ≥ 150 μg RNA transcript in 2 hours.

      If the control reaction is not working, there may be technical problems during reaction set up. Repeat the reaction by following the protocol carefully; take all precautions to avoid RNase contamination. Contact NEB for technical assistance.

      The control plasmid sequence can be found within the DNA Sequences and Maps Tool under the name “FLuc Control Plasmid”. The FLuc control template is generated by linearizing the plasmid with StuI.

    • Low Yield of Full-length RNA
      If the transcription reaction with your template generates full-length RNA, but the yield is significantly lower than expected, it is possible that contaminants in the DNA template are inhibiting the RNA polymerase, or the DNA concentration may be incorrect. Alternatively, additional purification of DNA template may be required. Phenol:chloroform extraction is recommended (see template DNA preparation section).
    • Low Yield of Short Transcript
      High yields of short transcripts (< 0.3 kb) are achieved by extending incubation time and increasing the amount of template. Incubation of reactions up to 16 hours (overnight) or using up to 2 μg of template will help to achieve maximum yield.
    • RNA Transcript Smearing on Denaturing Gel
      If the RNA appears degraded (e.g., smeared) on denaturing agarose or polyacrylamide gel, the DNA template is likely contaminated with RNase. DNA templates contaminated with RNase can affect the length and yield of RNA synthesized (a smear below the expected transcript length). If the plasmid DNA template is contaminated with RNase, perform phenol:chloroform extraction, then ethanol precipitate and dissolve the DNA in nuclease-free water (see template DNA preparation section). 
    • RNA Transcript of Larger Size than Expected
      If the RNA transcript appears larger than expected on a denaturing gel, template plasmid DNA may be incompletely digested. Even small amounts of undigested circular DNA can produce large amounts of long transcripts. Check template for complete digestion. If undigested plasmid is confirmed, repeat restriction enzyme digestion.

      Larger size bands may also be observed when the RNA transcript is not completely denatured due to the presence of strong secondary structures.

    • RNA Transcript of Smaller Size than Expected
      If denaturing gel analysis shows the presence of smaller bands than the expected size, it is most likely due to premature termination by the polymerase. Some sequences with resemblance to T7 RNA Polymerase termination signals will cause premature termination. Incubating the transcription reaction at lower temperatures, for example at 30°C, may increase the proportion of full-length transcript, however the yield will be decreased. For GC rich templates, or templates with secondary structures, incubation at 42°C may improve yield of full-length transcript.